Notice (8): Undefined variable: solution_of_interest [APP/View/Products/view.ctp, line 755]Code Context<!-- BEGIN: REQUEST_FORM MODAL -->
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'description' => '<div class="extra-spaced">
<p>ゲノムメチル化研究に利用できる数ある選択肢から、ゲノムカバレッジの幅に基づき、実施可能なプロジェクトは以下の通りです。</p>
<ul class="square">
<li>Whole Genome Bisulfite Sequencing/全ゲノムバイサルファイトシーケンシング（WGBS）全ゲノムをカバーします。</li>
<li>Reduced Representation Bisulfite Sequencing /（RRBS）プロモーターのCpGが豊かな領域に限定されています。</li>
<li>Bisulfite Amplicon Sequencing バイサルファイトアンプリコンシーケンス（BSAS）対象領域に限定（少数の遺伝子）</li>
</ul>
</div>
<div class="extra-spaced">
<p>シトシンの解像度に基づき、解析可能な箇所は以下の通りです。</p>
<ul class="square">
<li>単一塩基スケール（CpGコンテキストの各シトシン– WGBS、RRBS、BSAS、EPICなど）</li>
<li>Enrichment based method 濃縮ベース方法（MeDIP-Seq）</li>
</ul>
</div>
<div class="extra-spaced">
<h2>解析と一緒に提供されるもの</h2>
<ul class="accordion" data-accordion="" id="analysis">
<li class="accordion-navigation"><a href="#first"> <i class="fa fa-square-o"></i> Single-base resolution Analysis (WGBS, RRBS, BSAS, EPIC)</a>
<div id="first" class="content">
<p>This analysis provides information on each single CpG with its methylation percentage.</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis:</h3>
<ul>
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates (WGBS), number of CpGs detected, average coverage at CpG sites, number of CpGs detected with coverage greater than 10x, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from methylation calling and extraction (CpG location, number of methylated cytosines, number of unmethylated cytosines and coverage at the CpG site)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul>
<li>Comparative analysis (also called differential analysis) aimed at finding differentially methylated CpGs (DMCs) and differentially methylated regions (DMRs) between two groups of samples</li>
<li>Annotation of DMCs and DMRs for genomic regions (exons, introns, etc) and for CpG island location (islands, shores, shelves, etc)</li>
<li>Gene ontology enrichment analysis on genes associated with DMCs and DMRs</li>
<li>Pathway enrichment analysis on genes associated with DMCs and DMRs (KEGG or DOSE for human samples)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3061">please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
<li class="accordion-navigation"><a href="#second"> <i class="fa fa-square-o"></i> Methylated region resolution Analysis (MeDIP-Seq):</a>
<div id="second" class="content">
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left"><a href="#" data-reveal-id="quoteModal-3061">Please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
</ul>
</div>
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<ul class="square">
<li>Whole Genome Bisulfite Sequencing/全ゲノムバイサルファイトシーケンシング（WGBS）全ゲノムをカバーします。</li>
<li>Reduced Representation Bisulfite Sequencing /（RRBS）プロモーターのCpGが豊かな領域に限定されています。</li>
<li>Bisulfite Amplicon Sequencing バイサルファイトアンプリコンシーケンス（BSAS）対象領域に限定（少数の遺伝子）</li>
</ul>
</div>
<div class="extra-spaced">
<p>シトシンの解像度に基づき、解析可能な箇所は以下の通りです。</p>
<ul class="square">
<li>単一塩基スケール（CpGコンテキストの各シトシン– WGBS、RRBS、BSAS、EPICなど）</li>
<li>Enrichment based method 濃縮ベース方法（MeDIP-Seq）</li>
</ul>
</div>
<div class="extra-spaced">
<h2>解析と一緒に提供されるもの</h2>
<ul class="accordion" data-accordion="" id="analysis">
<li class="accordion-navigation"><a href="#first"> <i class="fa fa-square-o"></i> Single-base resolution Analysis (WGBS, RRBS, BSAS, EPIC)</a>
<div id="first" class="content">
<p>This analysis provides information on each single CpG with its methylation percentage.</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis:</h3>
<ul>
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates (WGBS), number of CpGs detected, average coverage at CpG sites, number of CpGs detected with coverage greater than 10x, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from methylation calling and extraction (CpG location, number of methylated cytosines, number of unmethylated cytosines and coverage at the CpG site)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul>
<li>Comparative analysis (also called differential analysis) aimed at finding differentially methylated CpGs (DMCs) and differentially methylated regions (DMRs) between two groups of samples</li>
<li>Annotation of DMCs and DMRs for genomic regions (exons, introns, etc) and for CpG island location (islands, shores, shelves, etc)</li>
<li>Gene ontology enrichment analysis on genes associated with DMCs and DMRs</li>
<li>Pathway enrichment analysis on genes associated with DMCs and DMRs (KEGG or DOSE for human samples)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3061">please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
<li class="accordion-navigation"><a href="#second"> <i class="fa fa-square-o"></i> Methylated region resolution Analysis (MeDIP-Seq):</a>
<div id="second" class="content">
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left"><a href="#" data-reveal-id="quoteModal-3061">Please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
</ul>
</div>
<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/cytosine-schema.png" /></center></div>
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$label = '<img src="/img/banners/banner-customizer-back.png" alt=""/>'include - APP/View/Products/view.ctp, line 755
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
ProductsController::slug() - APP/Controller/ProductsController.php, line 1052
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 491
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 193
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 118
Notice (8): Undefined variable: header [APP/View/Products/view.ctp, line 755]Code Context<!-- BEGIN: REQUEST_FORM MODAL -->
<div id="request_formModal" class="reveal-modal medium" data-reveal aria-labelledby="modalTitle" aria-hidden="true" role="dialog">
<?= $this->element('Forms/simple_form', array('solution_of_interest' => $solution_of_interest, 'header' => $header, 'message' => $message, 'campaign_id' => $campaign_id)) ?>
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'Product' => array(
'id' => '3061',
'antibody_id' => null,
'name' => 'メチル化データ解析',
'description' => '<div class="extra-spaced">
<p>ゲノムメチル化研究に利用できる数ある選択肢から、ゲノムカバレッジの幅に基づき、実施可能なプロジェクトは以下の通りです。</p>
<ul class="square">
<li>Whole Genome Bisulfite Sequencing/全ゲノムバイサルファイトシーケンシング（WGBS）全ゲノムをカバーします。</li>
<li>Reduced Representation Bisulfite Sequencing /（RRBS）プロモーターのCpGが豊かな領域に限定されています。</li>
<li>Bisulfite Amplicon Sequencing バイサルファイトアンプリコンシーケンス（BSAS）対象領域に限定（少数の遺伝子）</li>
</ul>
</div>
<div class="extra-spaced">
<p>シトシンの解像度に基づき、解析可能な箇所は以下の通りです。</p>
<ul class="square">
<li>単一塩基スケール（CpGコンテキストの各シトシン– WGBS、RRBS、BSAS、EPICなど）</li>
<li>Enrichment based method 濃縮ベース方法（MeDIP-Seq）</li>
</ul>
</div>
<div class="extra-spaced">
<h2>解析と一緒に提供されるもの</h2>
<ul class="accordion" data-accordion="" id="analysis">
<li class="accordion-navigation"><a href="#first"> <i class="fa fa-square-o"></i> Single-base resolution Analysis (WGBS, RRBS, BSAS, EPIC)</a>
<div id="first" class="content">
<p>This analysis provides information on each single CpG with its methylation percentage.</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis:</h3>
<ul>
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates (WGBS), number of CpGs detected, average coverage at CpG sites, number of CpGs detected with coverage greater than 10x, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from methylation calling and extraction (CpG location, number of methylated cytosines, number of unmethylated cytosines and coverage at the CpG site)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul>
<li>Comparative analysis (also called differential analysis) aimed at finding differentially methylated CpGs (DMCs) and differentially methylated regions (DMRs) between two groups of samples</li>
<li>Annotation of DMCs and DMRs for genomic regions (exons, introns, etc) and for CpG island location (islands, shores, shelves, etc)</li>
<li>Gene ontology enrichment analysis on genes associated with DMCs and DMRs</li>
<li>Pathway enrichment analysis on genes associated with DMCs and DMRs (KEGG or DOSE for human samples)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3061">please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
<li class="accordion-navigation"><a href="#second"> <i class="fa fa-square-o"></i> Methylated region resolution Analysis (MeDIP-Seq):</a>
<div id="second" class="content">
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left"><a href="#" data-reveal-id="quoteModal-3061">Please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
</ul>
</div>
<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/cytosine-schema.png" /></center></div>
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<p>ゲノムメチル化研究に利用できる数ある選択肢から、ゲノムカバレッジの幅に基づき、実施可能なプロジェクトは以下の通りです。</p>
<ul class="square">
<li>Whole Genome Bisulfite Sequencing/全ゲノムバイサルファイトシーケンシング（WGBS）全ゲノムをカバーします。</li>
<li>Reduced Representation Bisulfite Sequencing /（RRBS）プロモーターのCpGが豊かな領域に限定されています。</li>
<li>Bisulfite Amplicon Sequencing バイサルファイトアンプリコンシーケンス（BSAS）対象領域に限定（少数の遺伝子）</li>
</ul>
</div>
<div class="extra-spaced">
<p>シトシンの解像度に基づき、解析可能な箇所は以下の通りです。</p>
<ul class="square">
<li>単一塩基スケール（CpGコンテキストの各シトシン– WGBS、RRBS、BSAS、EPICなど）</li>
<li>Enrichment based method 濃縮ベース方法（MeDIP-Seq）</li>
</ul>
</div>
<div class="extra-spaced">
<h2>解析と一緒に提供されるもの</h2>
<ul class="accordion" data-accordion="" id="analysis">
<li class="accordion-navigation"><a href="#first"> <i class="fa fa-square-o"></i> Single-base resolution Analysis (WGBS, RRBS, BSAS, EPIC)</a>
<div id="first" class="content">
<p>This analysis provides information on each single CpG with its methylation percentage.</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis:</h3>
<ul>
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates (WGBS), number of CpGs detected, average coverage at CpG sites, number of CpGs detected with coverage greater than 10x, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from methylation calling and extraction (CpG location, number of methylated cytosines, number of unmethylated cytosines and coverage at the CpG site)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul>
<li>Comparative analysis (also called differential analysis) aimed at finding differentially methylated CpGs (DMCs) and differentially methylated regions (DMRs) between two groups of samples</li>
<li>Annotation of DMCs and DMRs for genomic regions (exons, introns, etc) and for CpG island location (islands, shores, shelves, etc)</li>
<li>Gene ontology enrichment analysis on genes associated with DMCs and DMRs</li>
<li>Pathway enrichment analysis on genes associated with DMCs and DMRs (KEGG or DOSE for human samples)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3061">please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
<li class="accordion-navigation"><a href="#second"> <i class="fa fa-square-o"></i> Methylated region resolution Analysis (MeDIP-Seq):</a>
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<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left"><a href="#" data-reveal-id="quoteModal-3061">Please consult with our expert bioinformatics team</a>.</p>
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$label = '<img src="/img/banners/banner-customizer-back.png" alt=""/>'include - APP/View/Products/view.ctp, line 755
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
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Notice (8): Undefined variable: message [APP/View/Products/view.ctp, line 755]Code Context<!-- BEGIN: REQUEST_FORM MODAL -->
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<p>ゲノムメチル化研究に利用できる数ある選択肢から、ゲノムカバレッジの幅に基づき、実施可能なプロジェクトは以下の通りです。</p>
<ul class="square">
<li>Whole Genome Bisulfite Sequencing/全ゲノムバイサルファイトシーケンシング（WGBS）全ゲノムをカバーします。</li>
<li>Reduced Representation Bisulfite Sequencing /（RRBS）プロモーターのCpGが豊かな領域に限定されています。</li>
<li>Bisulfite Amplicon Sequencing バイサルファイトアンプリコンシーケンス（BSAS）対象領域に限定（少数の遺伝子）</li>
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</div>
<div class="extra-spaced">
<p>シトシンの解像度に基づき、解析可能な箇所は以下の通りです。</p>
<ul class="square">
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<li>Enrichment based method 濃縮ベース方法（MeDIP-Seq）</li>
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</div>
<div class="extra-spaced">
<h2>解析と一緒に提供されるもの</h2>
<ul class="accordion" data-accordion="" id="analysis">
<li class="accordion-navigation"><a href="#first"> <i class="fa fa-square-o"></i> Single-base resolution Analysis (WGBS, RRBS, BSAS, EPIC)</a>
<div id="first" class="content">
<p>This analysis provides information on each single CpG with its methylation percentage.</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis:</h3>
<ul>
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates (WGBS), number of CpGs detected, average coverage at CpG sites, number of CpGs detected with coverage greater than 10x, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from methylation calling and extraction (CpG location, number of methylated cytosines, number of unmethylated cytosines and coverage at the CpG site)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
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<li>Comparative analysis (also called differential analysis) aimed at finding differentially methylated CpGs (DMCs) and differentially methylated regions (DMRs) between two groups of samples</li>
<li>Annotation of DMCs and DMRs for genomic regions (exons, introns, etc) and for CpG island location (islands, shores, shelves, etc)</li>
<li>Gene ontology enrichment analysis on genes associated with DMCs and DMRs</li>
<li>Pathway enrichment analysis on genes associated with DMCs and DMRs (KEGG or DOSE for human samples)</li>
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<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3061">please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
<li class="accordion-navigation"><a href="#second"> <i class="fa fa-square-o"></i> Methylated region resolution Analysis (MeDIP-Seq):</a>
<div id="second" class="content">
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left"><a href="#" data-reveal-id="quoteModal-3061">Please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
</ul>
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<ul class="square">
<li>Whole Genome Bisulfite Sequencing/全ゲノムバイサルファイトシーケンシング（WGBS）全ゲノムをカバーします。</li>
<li>Reduced Representation Bisulfite Sequencing /（RRBS）プロモーターのCpGが豊かな領域に限定されています。</li>
<li>Bisulfite Amplicon Sequencing バイサルファイトアンプリコンシーケンス（BSAS）対象領域に限定（少数の遺伝子）</li>
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<div class="extra-spaced">
<p>シトシンの解像度に基づき、解析可能な箇所は以下の通りです。</p>
<ul class="square">
<li>単一塩基スケール（CpGコンテキストの各シトシン– WGBS、RRBS、BSAS、EPICなど）</li>
<li>Enrichment based method 濃縮ベース方法（MeDIP-Seq）</li>
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<div class="extra-spaced">
<h2>解析と一緒に提供されるもの</h2>
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<li class="accordion-navigation"><a href="#first"> <i class="fa fa-square-o"></i> Single-base resolution Analysis (WGBS, RRBS, BSAS, EPIC)</a>
<div id="first" class="content">
<p>This analysis provides information on each single CpG with its methylation percentage.</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis:</h3>
<ul>
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates (WGBS), number of CpGs detected, average coverage at CpG sites, number of CpGs detected with coverage greater than 10x, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from methylation calling and extraction (CpG location, number of methylated cytosines, number of unmethylated cytosines and coverage at the CpG site)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul>
<li>Comparative analysis (also called differential analysis) aimed at finding differentially methylated CpGs (DMCs) and differentially methylated regions (DMRs) between two groups of samples</li>
<li>Annotation of DMCs and DMRs for genomic regions (exons, introns, etc) and for CpG island location (islands, shores, shelves, etc)</li>
<li>Gene ontology enrichment analysis on genes associated with DMCs and DMRs</li>
<li>Pathway enrichment analysis on genes associated with DMCs and DMRs (KEGG or DOSE for human samples)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3061">please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
<li class="accordion-navigation"><a href="#second"> <i class="fa fa-square-o"></i> Methylated region resolution Analysis (MeDIP-Seq):</a>
<div id="second" class="content">
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left"><a href="#" data-reveal-id="quoteModal-3061">Please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
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<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/cytosine-schema.png" /></center></div>
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View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
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ProductsController::slug() - APP/Controller/ProductsController.php, line 1052
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Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
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Notice (8): Undefined variable: campaign_id [APP/View/Products/view.ctp, line 755]Code Context<!-- BEGIN: REQUEST_FORM MODAL -->
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<p>ゲノムメチル化研究に利用できる数ある選択肢から、ゲノムカバレッジの幅に基づき、実施可能なプロジェクトは以下の通りです。</p>
<ul class="square">
<li>Whole Genome Bisulfite Sequencing/全ゲノムバイサルファイトシーケンシング（WGBS）全ゲノムをカバーします。</li>
<li>Reduced Representation Bisulfite Sequencing /（RRBS）プロモーターのCpGが豊かな領域に限定されています。</li>
<li>Bisulfite Amplicon Sequencing バイサルファイトアンプリコンシーケンス（BSAS）対象領域に限定（少数の遺伝子）</li>
</ul>
</div>
<div class="extra-spaced">
<p>シトシンの解像度に基づき、解析可能な箇所は以下の通りです。</p>
<ul class="square">
<li>単一塩基スケール（CpGコンテキストの各シトシン– WGBS、RRBS、BSAS、EPICなど）</li>
<li>Enrichment based method 濃縮ベース方法（MeDIP-Seq）</li>
</ul>
</div>
<div class="extra-spaced">
<h2>解析と一緒に提供されるもの</h2>
<ul class="accordion" data-accordion="" id="analysis">
<li class="accordion-navigation"><a href="#first"> <i class="fa fa-square-o"></i> Single-base resolution Analysis (WGBS, RRBS, BSAS, EPIC)</a>
<div id="first" class="content">
<p>This analysis provides information on each single CpG with its methylation percentage.</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis:</h3>
<ul>
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates (WGBS), number of CpGs detected, average coverage at CpG sites, number of CpGs detected with coverage greater than 10x, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from methylation calling and extraction (CpG location, number of methylated cytosines, number of unmethylated cytosines and coverage at the CpG site)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul>
<li>Comparative analysis (also called differential analysis) aimed at finding differentially methylated CpGs (DMCs) and differentially methylated regions (DMRs) between two groups of samples</li>
<li>Annotation of DMCs and DMRs for genomic regions (exons, introns, etc) and for CpG island location (islands, shores, shelves, etc)</li>
<li>Gene ontology enrichment analysis on genes associated with DMCs and DMRs</li>
<li>Pathway enrichment analysis on genes associated with DMCs and DMRs (KEGG or DOSE for human samples)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3061">please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
<li class="accordion-navigation"><a href="#second"> <i class="fa fa-square-o"></i> Methylated region resolution Analysis (MeDIP-Seq):</a>
<div id="second" class="content">
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left"><a href="#" data-reveal-id="quoteModal-3061">Please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
</ul>
</div>
<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/cytosine-schema.png" /></center></div>
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'description' => '<div class="extra-spaced">
<p>ゲノムメチル化研究に利用できる数ある選択肢から、ゲノムカバレッジの幅に基づき、実施可能なプロジェクトは以下の通りです。</p>
<ul class="square">
<li>Whole Genome Bisulfite Sequencing/全ゲノムバイサルファイトシーケンシング（WGBS）全ゲノムをカバーします。</li>
<li>Reduced Representation Bisulfite Sequencing /（RRBS）プロモーターのCpGが豊かな領域に限定されています。</li>
<li>Bisulfite Amplicon Sequencing バイサルファイトアンプリコンシーケンス（BSAS）対象領域に限定（少数の遺伝子）</li>
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<p>シトシンの解像度に基づき、解析可能な箇所は以下の通りです。</p>
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<li>単一塩基スケール（CpGコンテキストの各シトシン– WGBS、RRBS、BSAS、EPICなど）</li>
<li>Enrichment based method 濃縮ベース方法（MeDIP-Seq）</li>
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<h2>解析と一緒に提供されるもの</h2>
<ul class="accordion" data-accordion="" id="analysis">
<li class="accordion-navigation"><a href="#first"> <i class="fa fa-square-o"></i> Single-base resolution Analysis (WGBS, RRBS, BSAS, EPIC)</a>
<div id="first" class="content">
<p>This analysis provides information on each single CpG with its methylation percentage.</p>
<h3 class="diacol" style="font-weight: 100;">Standard Analysis:</h3>
<ul>
<li>Summary statistics (total sequenced reads, total mapping reads, uniquely aligned reads, PCR duplicates (WGBS), number of CpGs detected, average coverage at CpG sites, number of CpGs detected with coverage greater than 10x, etc.)</li>
<li>Trimmed and filtered reads in fastQ files after sequencing QC</li>
<li>BAM sorted files from alignment to reference genome (indexed bam files and bigwig files included)</li>
<li>BED files from methylation calling and extraction (CpG location, number of methylated cytosines, number of unmethylated cytosines and coverage at the CpG site)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Advanced Analysis</h3>
<ul>
<li>Comparative analysis (also called differential analysis) aimed at finding differentially methylated CpGs (DMCs) and differentially methylated regions (DMRs) between two groups of samples</li>
<li>Annotation of DMCs and DMRs for genomic regions (exons, introns, etc) and for CpG island location (islands, shores, shelves, etc)</li>
<li>Gene ontology enrichment analysis on genes associated with DMCs and DMRs</li>
<li>Pathway enrichment analysis on genes associated with DMCs and DMRs (KEGG or DOSE for human samples)</li>
</ul>
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left">If you require a type of analysis that is not in the previous list, <a href="#" data-reveal-id="quoteModal-3061">please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
<li class="accordion-navigation"><a href="#second"> <i class="fa fa-square-o"></i> Methylated region resolution Analysis (MeDIP-Seq):</a>
<div id="second" class="content">
<h3 class="diacol" style="font-weight: 100;">Customized Analysis</h3>
<p class="text-left"><a href="#" data-reveal-id="quoteModal-3061">Please consult with our expert bioinformatics team</a>.</p>
</div>
</li>
</ul>
</div>
<div class="extra-spaced"><center><img src="https://www.diagenode.com/img/product/services/cytosine-schema.png" /></center></div>
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