Publications,References

Read length versus Depth of Coverage for Viral Quasispecies Reconst...
Published: October, 2012

Abstract: Recent advancements of sequencing technology have opened up unprecedented opportunities in many application areas. Virus samples can now be sequenc... Read more »

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DNA shearing Bioruptor

Non-genotoxic carcinogen exposure induces defined changes in the 5-...
Published: October, 2012

Abstract: ABSTRACT: BACKGROUND: Induction and promotion of liver cancer by exposure to non-genotoxic carcinogens coincides with epigenetic perturbations, in... Read more »

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DNA shearing Bioruptor Antibody

Regulation of delta-aminolevulinic Acid dehydratase by krüppel-like...
Published: October, 2012

Abstract: Krüppel-like factor 1(KLF1) is a hematopoietic-specific zinc finger transcription factor essential for erythroid gene expression. In concert with t... Read more »

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Bioruptor Chromatin Shearing ChIP-qPCR

A genome-wide signature of glucocorticoid receptor binding in neuro...
Published: October, 2012

Abstract: ABSTRACT: BACKGROUND: Glucocorticoids, secreted by the adrenals in response to stress, profoundly affect structure and plasticity of neurons. Gluco... Read more »

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Bioruptor Chromatin Shearing ChIP-seq

Human β cell transcriptome analysis uncovers lncRNAs that are tissu...
Published: October, 2012

Abstract: A significant portion of the genome is transcribed as long noncoding RNAs (lncRNAs), several of which are known to control gene expression. The rep... Read more »

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Antibody

Features of the Arabidopsis recombination landscape resulting from ...
Published: October, 2012

Abstract: The rate of meiotic crossing over (CO) varies considerably along chromosomes, leading to marked distortions between physical and genetic distances.... Read more »

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DNA shearing Bioruptor Antibody

Epigenetic transgenerational inheritance of vinclozolin induced mou...
Published: October, 2012

Abstract: The endocrine disruptor vinclozolin has previously been shown to promote epigenetic transgenerational inheritance of adult onset disease in the rat... Read more »

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Antibody

The GLIB technique for genome-wide mapping of 5-hydroxymethylcytosine.
Published: October, 2012

Abstract: 5-Hydroxymethylcytosine (5hmC) is a newly discovered DNA base present at detectable levels in most mammalian cell types and tissues. It is generate... Read more »

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DNA shearing Bioruptor

ChIP-exo Method for Identifying Genomic Location of DNA-Binding Pro...
Published: October, 2012

Abstract: This unit describes the ChIP-exo methodology, which combines chromatin immunoprecipitation (ChIP) with lambda exonuclease digestion followed by hig... Read more »

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Bioruptor Chromatin Shearing ChIP-seq

Maize Unstable factor for orange1 Is Required for Maintaining Silen...
Published: October, 2012

Abstract: To understand the molecular mechanisms underlying paramutation, we examined the role of Unstable factor for orange1 (Ufo1) in maintaining paramutat... Read more »

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Bioruptor Chromatin Shearing ChIP-qPCR

The histone demethylase PHF8 is essential for cytoskeleton dynamics.
Published: October, 2012

Abstract: PHF8 is a histone demethylase associated with X-linked mental retardation. It has been described as a transcriptional co-activator involved in cell... Read more »

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Bioruptor Chromatin Shearing ChIP-qPCR

Promoter DNA methylation couples genome-defence mechanisms to epige...
Published: October, 2012

Abstract: Mouse primordial germ cells (PGCs) erase global DNA methylation (5mC) as part of the comprehensive epigenetic reprogramming that occurs during PGC ... Read more »

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DNA shearing Bioruptor

Draft Genome Sequence of Lactobacillus rossiae DSM 15814T.
Published: October, 2012

Abstract: The draft genome sequence of Lactobacillus rossiae DSM 15814(T) (CS1, ATCC BAA-88) was determined by a whole-genome shotgun approach. Reads were as... Read more »

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DNA shearing Bioruptor

Human-specific CpG "beacons" identify loci associated with human-sp...
Published: October, 2012

Abstract: Regulatory change has long been hypothesized to drive the delineation of the human phenotype from other closely related primates. Here we provide e... Read more »

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DNA shearing Bioruptor IP-Star

Association of UHRF1 with methylated H3K9 directs the maintenance o...
Published: September, 2012

Abstract: A fundamental challenge in mammalian biology has been the elucidation of mechanisms linking DNA methylation and histone post-translational modifica... Read more »

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Antibody 5mC (C15200081)

FRUIT, a Scar-Free System for Targeted Chromosomal Mutagenesis, Epi...
Published: September, 2012

Abstract: Recombineering is a widely-used approach to delete genes, introduce insertions and point mutations, and introduce epitope tags into bacterial chrom... Read more »

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Bioruptor Chromatin Shearing ChIP-qPCR

A Quantitative Proteomic Workflow for Characterization of Frozen Cl...
Published: September, 2012

Abstract: This paper describes a simple, highly efficient and robust proteomic workflow for routine liquid-chromatography tandem mass spectrometry analysis o... Read more »

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Bioruptor Cell Lysis Mass Spectrometry

PML promotes MHC class II gene expression by stabilizing the class ...
Published: September, 2012

Abstract: Promyelocytic leukemia (PML) nuclear bodies selectively associate with transcriptionally active genomic regions, including the gene-rich major hist... Read more »

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Bioruptor Cell Lysis Bioruptor Plus

Melanoma-Associated Cancer-Testis Antigen 16 (CT16) Regulates the E...
Published: September, 2012

Abstract: Cancer-testis (CT) antigens are predominantly expressed in testis or placenta, but absent in most adult tissues. During malignant transformation CT... Read more »

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MeDIP kit

Chromatin immunoprecipitation and microarray analysis reveal that T...
Published: September, 2012

Abstract: RNA polymerase II (RNAP-II) synthesizes the m7G-capped Spliced Leader (SL) RNA and most protein-coding mRNAs in trypanosomes. RNAP-II recruitment t... Read more »

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Bioruptor Chromatin Shearing

TET1 Suppresses Cancer Invasion by Activating the Tissue Inhibitors...
Published: September, 2012

Abstract: Tumor suppressor gene silencing through cytosine methylation contributes to cancer formation. Whether DNA demethylation enzymes counteract this onc... Read more »

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DNA shearing Bioruptor

Global transcriptional control by glucose and carbon regulator CcpA...
Published: September, 2012

Abstract: The catabolite control protein CcpA is a pleiotropic regulator that mediates the global transcriptional response to rapidly catabolizable carbohydr... Read more »

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Bioruptor Chromatin Shearing

Bacille Calmette-Guerin induces NOD2-dependent nonspecific protecti...
Published: September, 2012

Abstract: Adaptive features of innate immunity, recently described as "trained immunity," have been documented in plants, invertebrate animals, and mice, but... Read more »

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Antibody

p53-Independent regulation of p21Waf1/Cip1 expression and senescenc...
Published: September, 2012

Abstract: p21 is a potent cyclin-dependent kinase inhibitor that plays a role in promoting G1 cell cycle arrest and cellular senescence. Consistent with this... Read more »

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Antibody

ERG and FLI1 binding sites demarcate targets for aberrant epigeneti...
Published: September, 2012

Abstract: ERG and FLI1 are closely related members of the ETS family of transcription factors and have been identified as essential factors for the function ... Read more »

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IP-Star Antibody

H4K20me1 Contributes to Downregulation of X-Linked Genes for C. ele...
Published: September, 2012

Abstract: The Caenorhabditis elegans dosage compensation complex (DCC) equalizes X-chromosome gene dosage between XO males and XX hermaphrodites by two-fold ... Read more »

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Antibody

Dynamic and Coordinated Epigenetic Regulation of Developmental Tran...
Published: September, 2012

Abstract: Heart development is exquisitely sensitive to the precise temporal regulation of thousands of genes that govern developmental decisions during diff... Read more »

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Bioruptor Chromatin Shearing ChIP-seq

A GWAS sequence variant for platelet volume marks an alternative DN...
Published: September, 2012

Abstract: We recently identified 68 genomic loci where common sequence variants are associated with platelet count and volume. Platelets are formed in the bo... Read more »

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Bioruptor Chromatin Shearing ChIP-seq

Tet2 Facilitates the Derepression of Myeloid Target Genes during CE...
Published: September, 2012

Abstract: The methylcytosine hydroxylase Tet2 has been implicated in hematopoietic differentiation and the formation of myeloid malignancies when mutated. An... Read more »

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DNA shearing Bioruptor Antibody

A Temporal Chromatin Signature in Human Embryonic Stem Cells Identi...
Published: September, 2012

Abstract: Directed differentiation of human embryonic stem cells (ESCs) into cardiovascular cells provides a model for studying molecular mechanisms of human... Read more »

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Bioruptor Chromatin Shearing ChIP-seq

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